University of Virginia Cancer Center researchers have developed a new way to identify patients with acute myeloid leukemia who are at high risk of poor outcomes, which could one day lead to more tailored treatments and improved patient results.
Acute myeloid leukemia, or AML, is one of the most common leukemias, or blood cancers, in adults. It starts in the blood-forming cells in the bone marrow and often spreads to the bloodstream. Until now, doctors have relied on analyzing patients’ genes and chromosomes to determine who may be at highest risk, but the limitations of that approach have made researchers eager to develop better ways to “stratify” patients and tailor treatments to their needs.
The UVA researchers found that they could measure specific “bioactive molecules” in cancer cells – molecules that result from microbial activity – and identify patients at risk of poor outcomes.
“By examining lipid profiles, we may be able to predict how patients will respond to standard treatments in clinic,” said researcher B. Bishal Paudel of the UVA Cancer Center and the University of Virginia’s Department of Biomedical Engineering. “This could lead to new biomarkers in AML that go beyond genomic features that are currently considered.”
Types of Acute Myeloid Leukemia
The research team used machine learning to analyze bioactive molecules known as “sphingolipids” in cancer cells. Researchers think these molecules play critical roles in the development of AML and in determining its ability to resist treatment. The researchers found that by measuring these lipids, they could classify AML into two subtypes. Patients in the high-risk subtype had twice the risk of treatment failure as patients in the other subtype.
Researchers on the project include B. Bishal Paudel of the UVA Cancer Center and the Department of Biomedical Engineering and researcher Kevin A. Janes, of the UVA Cancer Center, the Department of Biomedical Engineering and the School of Medicine’s Department of Biochemistry and Molecular Genetics. (Contributed photo, left, and photo by Dan Addison, University Communications)
“Lipids are more difficult to measure than genes, but this study suggests it is worth the effort,” said researcher Kevin A. Janes, of the UVA Cancer Center, the UVA Department of Biomedical Engineering and the School of Medicine’s Department of Biochemistry and Molecular Genetics. “By using the data to learn the relationship between genes and sphingolipid subtype, we showed how subtypes could be accurately inferred in many more patients than we measured directly.”
Patients in the high-risk subtype may be spared from intensive chemotherapy regimens that are unlikely to work against their AML, the researchers say. Doctors could direct these patients toward clinical trials of emerging treatments that may work better for them.
Eventually, the researchers believe they may be able to develop ways to target sphingolipids to improve patient outcomes. The scientists would, in essence, try to alter the sphingolipids in high-risk patients to become more like the low-risk AML subtype. This could make their cancer easier to treat and reduce the chances of treatment failure.
“More research needs to be done to confirm our findings, but we believe this lipid-based subtyping could lead to tailored treatments to AML patients,” researcher Dr. Thomas P. Loughran Jr., director of UVA Cancer Center, said. Loughran is one of the project’s principal investigators, along with scientists from Eastern Carolina University, Pennsylvania State University and Memorial Sloan Kettering Cancer Center. “We’re currently in an exciting phase of studying how lipids affect blood cancers.”
Finding new and better ways to improve cancer care is a core mission of UVA Cancer Center, one of only 54 cancer centers in the country designated as a comprehensive cancer center by the National Cancer Institute. The designation recognizes elite cancer centers with the most outstanding cancer treatment and research programs in the nation.
Findings Published
The researchers have published their findings in the scientific journal Blood Advances. The research team consisted of Paudel, Su-Fern Tan, Todd E. Fox, Johnson Ung, Jeremy Shaw, Wendy Dunton, Irene Lee, Arati Sharma, Aaron D. Viny, Brian M. Barth, Martin S. Tallman, Myles Cabot, Francine E. Garrett-Bakelman, Ross L. Levine, Mark Kester, David Claxton, David J. Feith, Janes and Loughran.
The researchers report no competing interests in the work. A full list of disclosures is included in the paper.
The work was supported by the National Institutes of Health and its National Cancer Institute, grants P01 CA171983, P30 CA044579, R35 CA197594, P30 CA008748, F31 CA271809, K08 CA215317 and R03 CA252825; a UVA Robert R. Wagner Fellowship; and the Edward P. Evans Foundation. UVA’s Department of Biomedical Engineering is a joint program of the School of Medicine and School of Engineering and Applied Science.
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November 19, 2024
